- Peer-reviewed articles -
Prakash P, Jiang X, Richards L, Schofield Z, Schafer P, Polin M, Soyer OS & Asally M
Emergence of synchronised growth oscillations in filamentous fungi
Journal of Royal Society Interface, 2024, 21(19)
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de Souza-Guerreiro TC, Bacellar LH, da Costa TS, Edwards CLA, Tasic L & Asally M
Membrane potential dynamics unveil the promise of Bioelectrical Antimicrobial Susceptibility Testing (BeAST) for anti-fungal screening
mBio, 2024, 15(8)
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Thioflavin T indicates membrane potential in mammalian cells and can affect it in a blue light dependent manner
Skates E, Delattre H, Schofield Z, Asally M & Soyer OS
Biophysical Reports, 2023, 3(4), 100134
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Phase-separated nuclear bodies of nucleoporin fusions promote condensation of MLL1/CRM1 and rearrangement of 3D genome structure
Oka M, Otani M, Miyamoto Y, Oshima R, Adachi J, Tomonaga T, Asally M, Nagaoka Y, Tanaka K, Toyoda A, Ichikawa K, Morishita S, Isono K, Koseki H, Nakato R, Ohkawa Y & Yoneda Y
Cell Reports, 2023, 42(8)
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Membrane targeted azobenzene drives optical modulation of bacterial membrane potential
de Souza TC, Bondelli G, Grobas I, Donini S, Sesti V, Bertarelli C, Lanzani G, Asally M & Paterno GM
Advanced Science, 2023, 10(8)
Featured in:
Phys.org, EurekAlert!, Biomedical picture of the day, The Scientist, Science Daily etc
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Electrotaxis behavior of droplets composed of aqueous Belousov-Zhabotinsky solutions suspended in oil phase
Back O, Asally M, Wang Z & Hayashi Y
Scientific Reports, 2023, 13, 1340
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The dynamics of single-to-multi layer transition in bacterial swarms
Grobas I, Asally M & Polin M
Frontiers in Soft Matter, 2022, 2:936779
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Seeking insights into aging through yeast mitochondrial electrophysiology
de Souza-Guerreiro TC & Asally M
Bioelectricity, 2021, 3(2):111-115
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Swarming bacteria undergo localized dynamic phase transition to form stress-induced biofilms
Grobas I, Polin M* & Asally M* (*equal contribution)
eLife, 2021, 10:e62632
Featured in:
Phys.org, EurekAlert!, Technology Networks, News Medical, AZO Life Sciences, Scitech Daily
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An agent-based model for interrelation between COVID-19 outbreak and economic activities
Kano T, Yasui K, Mikami T, Asally M & Ishiguro A
Proceedings of the Royal Society A, 2021, 477(2245)
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Biofilm and swarming emergent behaviours controlled through the aid of biophysical understanding and tools
Grobas I, Bazzoli DG & Asally M
Biochemical Society Transactions, 2020, 48(6): 2903-2913
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Bioelectrical understanding and engineering of cell biology
Schofield Z, Meloni G, Tran P, Zerfass C, Sena G, Hayashi Y, Grant M, Contera SA, Minteer SD, Kim M, Prindle A,
Rocha P, Djamgoz MBA, Pilizota T, Unwin PR, Asally M & Soyer OS.
Journal of Royal Society Interface, 2020, 17(166):20200013
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The microbiologist's guide to membrane potential dynamics
Benarroch JM & Asally M
Trends in Microbiology, 2020, 28 (4): 304-314
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Scanning conductance microscopy reveals differences in the ionic environments of gram positive and negative bacteria
Cremin K, Jones B, Teahan J, Meloni GM, Perry D, Zerfass C, Asally M, Soyer OS & Unwin PR
Analytical Chemistry, 2020, 92(24): 16024-32
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One-dimensional reaction-diffusion model for intra-and inter-biofilm oscillatory dynamics
Mikami T, Asally M, Kano T & Ishiguro A
Artificial Life Conference Proceedings, 2020, 712-714
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Pattern engineering of living bacterial colonies using meniscus-driven fluidic channels
Kantsler V, Ontanon-McDonald E*, Kuey C*, Ghanshyam MJ, Roffin MC & Asally M (*equal contribution)
ACS Synthetic Biology, 2020, 9(6):1277–1283
Featured in:
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GEN,
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Infosurhoy, Scitech Daily, Space Daily, Biotechniques, Technology Networks, Nanowerk, Alpha Galileo
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Rapid detection of proliferative bacteria by Electrical Stimulation
Edwards CLA, Malyshev D, Stratford JP & Asally M
Bio-protocol, 2020, 10 (3)
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Interrogating metabolism as an electron flow system
Zerfass C, Asally M & Soyer OS
Current Opinion in Systems Biology, 2019, 13: 59-67
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Electrical polarization enables integrative quality control during bacterial differentiation into spores
Sirec T, Benarroch JM, Buffard P, Garcia-Ojalvo J & Asally M
iScience, 2019, 16: 378-389
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Electrically induced bacterial membrane potential dynamics correspond to cellular proliferation capacity
Stratford JP, Edwards CLA, Ghanshyam MJ, Malyshev D, Delise MA, Hayashi Y & Asally M
PNAS, 2019, 116(19): 9552-57
Click here for the python Script for FHN bacteria model
Featured in:
EurekAlert!,
News Medical Life Sciences,
Food Safety News,
Laboratory News,
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Medindia,
Technology Networks,
The Medical News,
Physics.org,
Science Daily,
Bioengineer,
Pharma Microbiology,
Medica,
Rapid Microbe News,
Laboratory Talk,
Science Codex,
BioReports
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A reaction-diffusion model for simulating the oscillatory expansion of biofilms
Mikami T, Asally M, Kano T & Ishiguro A
Artificial Life Conference Proceeding, 2019, 31, 218-219
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Decentralized Control Scheme for Swarm Robots with Self-Sacrifice
Kano T, Asally M & Ishiguro A
Artificial Life Conference Proceeding, 2018, 30, 544-545
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Impact of spatial organization on a novel auxotrophic interaction among soil microbes
Jiang X, Zerfass C, Feng S, Eichmann R, Asally M, Schaefer P & Soyer OS
ISME journal, 2018, 12: 1443-56
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Ion channels enable electrical communication within bacterial communities
Prindle A, Liu J*, Asally M*, Ly S, Garcia-Ojalvo J & Suel GM (*equal contributions)
Nature, 2015, 527: 59-63
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Metabolic co-dependence gives rise to collective oscillations within biofilms
Liu J, Prindle A*, Humphries J*, Gabalda-Sagarra M*, Asally M*, Lee DD, Ly S, Garcia-Ojalvo J & Suel GM (*equal contributions)
Nature, 2015, 523: 550-554
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Differential role for transcription factor Oct4 nucleocytoplasmic dynamics in somatic cell reprogramming and self-renewal of embryonic stem cells
Oka M, Moriyama T, Asally M, Kawakami K & Yoneda
Journal of Biological Chemistry, 2013, 288(21): 15085-97
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Localized cell death focuses mechanical forces during 3D patterning in a biofilm
Asally M, Kittisopikul M, Rue P, Du Y, Hu Z, Cagatay T, Robinson AB, Lu H, Garcia-Ojalvo J & Suel GM
PNAS , 2012, 109(46):1889-96
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Nuclear retention of importin-a coordinates cell fate through changes in gene expression
Yasuda Y, Miyamoto Y, Yamashiro T, Asally M, Masui A, Wong C, Lovel KL & Yoneda Y
EMBO Journal, 2012, 31(1): 83-94
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Nup358, a nucleoporin, functions as a key determinant of the nuclear pore complex structure remodeling during skeletal myogenesis
Asally M, Yasuda Y, Oka M, Otsuka S, Yoshimura SH, Takeyasu K & Yoneda Y
FEBS Journal, 2011, 278(4): 610-21
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The mobile FG nucleoporin Nup98 is a cofactor for Crm1-dependent protein export
Oka M, Asally M, Yasuda Y, Ogawa Y, Tachibana T & Yoneda Y
Molecular Biology of the Cell , 2011, 21:
1885-96
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Two isoforms of Npap60 (Nup50) differentially regulate nuclear protein import
Ogawa Y, Miyamoto Y, Asally M, Oka M, Yasuda Y & Yoneda Y
Molecular Biology of the Cell , 2010, 21: 630-38
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Triggering neural differentiation of ES cells by subtype switching of importin-alpha
Yasuhara N, Shibazaki N, Tanaka S, Nagai M, Kamikawa Y, Oe S, Asally M, Kamachi Y, Kondo H & Yoneda Y
Nature Cell Biology, 2006, 9(1): 72-79
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Beta-catenin can act as a nuclear import receptor for its partner transcription factor, lymphocyte enhancer factor-1
Asally M & Yoneda Y
Experimental Cell Research, 2005, 308(2): 357-63
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